CRAN Package Check Results for Package GeoDE

Last updated on 2020-03-29 01:48:55 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 6.90 62.95 69.85 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 112.51 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 101.94 NOTE
r-devel-windows-ix86+x86_64 1.0 15.00 88.00 103.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 1.0 14.00 93.00 107.00 NOTE
r-patched-linux-x86_64 1.0 7.79 76.67 84.46 NOTE
r-patched-solaris-x86 1.0 162.20 NOTE
r-release-linux-x86_64 1.0 7.40 71.16 78.56 NOTE
r-release-windows-ix86+x86_64 1.0 19.00 88.00 107.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 11.00 97.00 108.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    PAEA : <anonymous>: no visible global function definition for
     'integrate'
    PAEAAnalysis: no visible global function definition for
     'txtProgressBar'
    PAEAAnalysis : <anonymous>: no visible global function definition for
     'setTxtProgressBar'
    PAEAAnalysis: no visible global function definition for 'par'
    PAEAAnalysis: no visible global function definition for 'barplot'
    chdirSig: no visible global function definition for 'prcomp'
    chdirSig: no visible global function definition for 'rchisq'
    chdirSig: no visible global function definition for 'txtProgressBar'
    chdirSig : <anonymous> : <anonymous>: no visible global function
     definition for 'setTxtProgressBar'
    chdirplots : <anonymous>: no visible global function definition for
     'par'
    chdirplots : <anonymous>: no visible global function definition for
     'arrows'
    chdirplots : <anonymous>: no visible global function definition for
     'barplot'
    multigmtPAEAAnalysis: no visible global function definition for
     'txtProgressBar'
    multigmtPAEAAnalysis : <anonymous>: no visible global function
     definition for 'setTxtProgressBar'
    multigmtPAEAAnalysis : <anonymous>: no visible global function
     definition for 'data'
    multigmtPAEAAnalysis : <anonymous>: no visible global function
     definition for 'write.table'
    Undefined global functions or variables:
     arrows barplot data integrate par prcomp rchisq setTxtProgressBar
     txtProgressBar write.table
    Consider adding
     importFrom("graphics", "arrows", "barplot", "par")
     importFrom("stats", "integrate", "prcomp", "rchisq")
     importFrom("utils", "data", "setTxtProgressBar", "txtProgressBar",
     "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'PAEA_p_values-Cancer_Cell_Line_Encyclopedia.gmt.txt'
     'PAEA_p_values-ChEA.gmt.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.0
Check: R code for possible problems
Result: NOTE
    PAEA : <anonymous>: no visible global function definition for
     'integrate'
    PAEAAnalysis: no visible global function definition for
     'txtProgressBar'
    PAEAAnalysis : <anonymous>: no visible global function definition for
     'setTxtProgressBar'
    PAEAAnalysis: no visible global function definition for 'par'
    PAEAAnalysis: no visible global function definition for 'barplot'
    chdirSig: no visible global function definition for 'prcomp'
    chdirSig: no visible global function definition for 'rchisq'
    chdirSig: no visible global function definition for 'txtProgressBar'
    chdirSig : <anonymous> : <anonymous>: no visible global function
     definition for 'setTxtProgressBar'
    chdirplots : <anonymous>: no visible global function definition for
     'par'
    chdirplots : <anonymous>: no visible global function definition for
     'plot'
    chdirplots : <anonymous>: no visible global function definition for
     'arrows'
    chdirplots : <anonymous>: no visible global function definition for
     'barplot'
    multigmtPAEAAnalysis: no visible global function definition for
     'txtProgressBar'
    multigmtPAEAAnalysis : <anonymous>: no visible global function
     definition for 'setTxtProgressBar'
    multigmtPAEAAnalysis : <anonymous>: no visible global function
     definition for 'data'
    multigmtPAEAAnalysis : <anonymous>: no visible global function
     definition for 'write.table'
    Undefined global functions or variables:
     arrows barplot data integrate par plot prcomp rchisq
     setTxtProgressBar txtProgressBar write.table
    Consider adding
     importFrom("graphics", "arrows", "barplot", "par", "plot")
     importFrom("stats", "integrate", "prcomp", "rchisq")
     importFrom("utils", "data", "setTxtProgressBar", "txtProgressBar",
     "write.table")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64-gcc8, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64