CRAN Package Check Results for Package NEArender

Last updated on 2019-10-19 01:50:19 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5 8.05 284.63 292.68 NOTE
r-devel-linux-x86_64-debian-gcc 1.5 7.76 241.26 249.02 NOTE
r-devel-linux-x86_64-fedora-clang 1.5 182.85 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5 180.17 NOTE
r-devel-windows-ix86+x86_64 1.5 20.00 107.00 127.00 WARN
r-patched-linux-x86_64 1.5 8.57 271.09 279.66 OK
r-patched-solaris-x86 1.5 133.10 WARN
r-release-linux-x86_64 1.5 8.27 70.39 78.66 WARN
r-release-windows-ix86+x86_64 1.5 15.00 82.00 97.00 WARN
r-release-osx-x86_64 1.5 OK
r-oldrel-windows-ix86+x86_64 1.5 11.00 77.00 88.00 WARN
r-oldrel-osx-x86_64 1.5 OK

Check Details

Version: 1.5
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'single_gene_ags.groups.tsv'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'NEArender_vignette.Rmd' using rmarkdown
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building 'NEArender_vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'NEArender_vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘NEArender_vignette.Rmd’ using rmarkdown
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection to 'http://research.scilifelab.se/andrej_alexeyenko/downloads/test_data/cluster2_Downregulated_ags.txt'
    --- failed re-building ‘NEArender_vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘NEArender_vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-linux-x86_64

Version: 1.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Warning in block_exec(params) :
     Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
    Error in loadNamespace(name) : there is no package called 'formatR'
    
    Quitting from lines 174-175 (NEArender_vignette.Rmd)
    Error: processing vignette 'NEArender_vignette.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64