CRAN Package Check Results for Package blockcluster

Last updated on 2019-10-19 01:50:08 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.4.3 467.62 57.54 525.16 OK
r-devel-linux-x86_64-debian-gcc 4.4.3 372.95 44.92 417.87 OK
r-devel-linux-x86_64-fedora-clang 4.4.3 745.58 NOTE
r-devel-linux-x86_64-fedora-gcc 4.4.3 745.05 OK
r-devel-windows-ix86+x86_64 4.4.3 962.00 112.00 1074.00 NOTE
r-patched-linux-x86_64 4.4.3 410.34 54.73 465.07 OK
r-patched-solaris-x86 4.4.3 540.90 ERROR
r-release-linux-x86_64 4.4.3 420.75 56.00 476.75 OK
r-release-windows-ix86+x86_64 4.4.3 742.00 151.00 893.00 NOTE
r-release-osx-x86_64 4.4.3 NOTE
r-oldrel-windows-ix86+x86_64 4.4.3 683.00 119.00 802.00 NOTE
r-oldrel-osx-x86_64 4.4.3 NOTE

Additional issues

clang-UBSAN gcc-UBSAN valgrind

Check Details

Version: 4.4.3
Check: installed package size
Result: NOTE
     installed size is 57.2Mb
     sub-directories of 1Mb or more:
     libs 55.9Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 4.4.3
Check: examples
Result: ERROR
    Running examples in ‘blockcluster-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: blockcluster
    > ### Title: Co-Clustering Package
    > ### Aliases: blockcluster
    >
    > ### ** Examples
    >
    >
    > ## Simple example with simulated binary data
    > ## load data
    > data(binarydata)
    > ## usage of coclusterBinary function in its most simplest form
    > out<-coclusterBinary(binarydata,nbcocluster=c(2,3))
    
     *** caught segfault ***
    address c, cause 'memory not mapped'
Flavor: r-patched-solaris-x86

Version: 4.4.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘blockcluster_tutorial.Rnw’ using Sweave
    Loading required package: rtkore
    Loading required package: Rcpp
    
    Attaching package: ‘rtkore’
    
    The following object is masked from ‘package:Rcpp’:
    
     LdFlags
    
    blockcluster version 4.4.3 loaded
    
    ----------------
    Copyright (C) <MODAL team @INRIA,Lille & U.M.R. C.N.R.S. 6599 Heudiasyc, UTC>
    Please post questions and bugs at: <https://gforge.inria.fr/forum/forum.php?forum_id=11190&group_id=3679>
    
    Warning: stack imbalance in '<-', 39 then 91
    Warning: stack imbalance in 'withVisible', 33 then 85
    
     *** caught segfault ***
    address 28db, cause 'memory not mapped'
    
    Traceback:
     1: coclusterBinary(binarydata, nbcocluster = c(3, 2), model = "pik_rhol_epsilon")
     2: eval(expr, .GlobalEnv)
     3: eval(expr, .GlobalEnv)
     4: withVisible(eval(expr, .GlobalEnv))
     5: doTryCatch(return(expr), name, parentenv, handler)
     6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
     7: tryCatchList(expr, classes, parentenv, handlers)
     8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
     9: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE)
    10: evalFunc(ce, options)
    11: tryCatchList(expr, classes, parentenv, handlers)
    12: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()})
    13: driver$runcode(drobj, chunk, chunkopts)
    14: utils::Sweave(...)
    15: engine$weave(file, quiet = quiet, encoding = enc)
    16: doTryCatch(return(expr), name, parentenv, handler)
    17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    18: tryCatchList(expr, classes, parentenv, handlers)
    19: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    20: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/blockcluster.Rcheck/vign_test/blockcluster", ser_elibs = "/tmp/Rtmp1taO3f/filebbd31ac1114.rds")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86